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removed unnecessary fasta for tumor_only_bam

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SusiJo 2022-05-20 13:06:16 +02:00
parent f392c4bed5
commit 00077c36c8
1 changed files with 1 additions and 2 deletions
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tests/modules/cnvkit/batch/main.nf
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@ -50,10 +50,9 @@ workflow test_cnvkit_tumoronly {
file(params.test_data['homo_sapiens']['illumina']['test2_paired_end_sorted_bam'], checkIfExists: true), file(params.test_data['homo_sapiens']['illumina']['test2_paired_end_sorted_bam'], checkIfExists: true),
[] []
] ]
fasta = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
reference = file(params.test_data['generic']['cnn']['reference'], checkIfExists: true) reference = file(params.test_data['generic']['cnn']['reference'], checkIfExists: true)
CNVKIT_TUMORONLY ( input, fasta, [], reference ) CNVKIT_TUMORONLY ( input, [], [], reference )
} }
workflow test_cnvkit_tumoronly_cram { workflow test_cnvkit_tumoronly_cram {