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Update main.nf

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James A. Fellows Yates 2021-11-03 12:10:38 +01:00 committed by GitHub
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tests/modules/gatk3/unifiedgenotyper/main.nf
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@ -7,6 +7,7 @@ include { GATK3_UNIFIEDGENOTYPER } from '../../../../modules/gatk3/unifiedgenoty
workflow test_gatk3_unifiedgenotyper { workflow test_gatk3_unifiedgenotyper {
input = file(params.test_data['sarscov2']['illumina']['test_single_end_bam'], checkIfExists: true) input = file(params.test_data['sarscov2']['illumina']['test_single_end_bam'], checkIfExists: true)
ref = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
GATK3_UNIFIEDGENOTYPER ( input ) GATK3_UNIFIEDGENOTYPER ( input, ref )
} }