diff --git a/tests/config/pytest_modules.yml b/tests/config/pytest_modules.yml
index d925b76d..eedbdc36 100644
--- a/tests/config/pytest_modules.yml
+++ b/tests/config/pytest_modules.yml
@@ -1374,3 +1374,23 @@ yara/index:
 yara/mapper:
   - modules/yara/mapper/**
   - tests/modules/yara/mapper/**
+
+subworkflows/align_bowtie2:
+  - subworkflows/nf-core/align_bowtie2/**
+  - tests/subworkflows/nf-core/align_bowtie2/**
+
+subworkflows/bam_stats_samtools: &subworkflows/bam_stats_samtools
+  - subworkflows/nf-core/bam_stats_samtools/**
+  - tests/subworkflows/nf-core/bam_stats_samtools/**
+
+subworkflows/bam_sort_samtools:
+  - subworkflows/nf-core/bam_sort_samtools/**
+  - tests/subworkflows/nf-core/bam_sort_samtools/**
+
+subworkflows/sra_fastq:
+  - subworkflows/nf-core/sra_fastq/**
+  - tests/subworkflows/nf-core/sra_fastq/**
+
+subworkflows/gatk_create_som_pon:
+  - subworkflows/nf-core/gatk_create_som_pon/**
+  - tests/subworkflows/nf-core/gatk_create_som_pon/**
diff --git a/tests/config/pytest_subworkflows.yml b/tests/config/pytest_subworkflows.yml
deleted file mode 100644
index 4f9c5514..00000000
--- a/tests/config/pytest_subworkflows.yml
+++ /dev/null
@@ -1,21 +0,0 @@
-subworkflows/align_bowtie2:
-  - subworkflows/nf-core/align_bowtie2/**
-  - tests/subworkflows/nf-core/align_bowtie2/**
-
-subworkflows/bam_stats_samtools:
-  - subworkflows/nf-core/bam_stats_samtools/**
-  - tests/subworkflows/nf-core/bam_stats_samtools/**
-
-subworkflows/bam_sort_samtools:
-  - subworkflows/nf-core/bam_sort_samtools/**
-  - tests/subworkflows/nf-core/bam_sort_samtools/**
-
-subworkflows/sra_fastq:
-  - subworkflows/nf-core/sra_fastq/**
-  - tests/subworkflows/nf-core/sra_fastq/**
-
-subworkflows/gatk_create_som_pon:
-  - subworkflows/nf-core/gatk_create_som_pon/**
-  - tests/subworkflows/nf-core/gatk_create_som_pon/**
-  
-  
\ No newline at end of file