From 04cf48b6635b11309a9dfc9cf0cb737f63208ec5 Mon Sep 17 00:00:00 2001 From: Edmund Miller Date: Wed, 27 Oct 2021 11:39:32 -0500 Subject: [PATCH] ci: Remove pytest_subworkflows --- tests/config/pytest_modules.yml | 20 ++++++++++++++++++++ tests/config/pytest_subworkflows.yml | 21 --------------------- 2 files changed, 20 insertions(+), 21 deletions(-) delete mode 100644 tests/config/pytest_subworkflows.yml diff --git a/tests/config/pytest_modules.yml b/tests/config/pytest_modules.yml index d925b76d..eedbdc36 100644 --- a/tests/config/pytest_modules.yml +++ b/tests/config/pytest_modules.yml @@ -1374,3 +1374,23 @@ yara/index: yara/mapper: - modules/yara/mapper/** - tests/modules/yara/mapper/** + +subworkflows/align_bowtie2: + - subworkflows/nf-core/align_bowtie2/** + - tests/subworkflows/nf-core/align_bowtie2/** + +subworkflows/bam_stats_samtools: &subworkflows/bam_stats_samtools + - subworkflows/nf-core/bam_stats_samtools/** + - tests/subworkflows/nf-core/bam_stats_samtools/** + +subworkflows/bam_sort_samtools: + - subworkflows/nf-core/bam_sort_samtools/** + - tests/subworkflows/nf-core/bam_sort_samtools/** + +subworkflows/sra_fastq: + - subworkflows/nf-core/sra_fastq/** + - tests/subworkflows/nf-core/sra_fastq/** + +subworkflows/gatk_create_som_pon: + - subworkflows/nf-core/gatk_create_som_pon/** + - tests/subworkflows/nf-core/gatk_create_som_pon/** diff --git a/tests/config/pytest_subworkflows.yml b/tests/config/pytest_subworkflows.yml deleted file mode 100644 index 4f9c5514..00000000 --- a/tests/config/pytest_subworkflows.yml +++ /dev/null @@ -1,21 +0,0 @@ -subworkflows/align_bowtie2: - - subworkflows/nf-core/align_bowtie2/** - - tests/subworkflows/nf-core/align_bowtie2/** - -subworkflows/bam_stats_samtools: - - subworkflows/nf-core/bam_stats_samtools/** - - tests/subworkflows/nf-core/bam_stats_samtools/** - -subworkflows/bam_sort_samtools: - - subworkflows/nf-core/bam_sort_samtools/** - - tests/subworkflows/nf-core/bam_sort_samtools/** - -subworkflows/sra_fastq: - - subworkflows/nf-core/sra_fastq/** - - tests/subworkflows/nf-core/sra_fastq/** - -subworkflows/gatk_create_som_pon: - - subworkflows/nf-core/gatk_create_som_pon/** - - tests/subworkflows/nf-core/gatk_create_som_pon/** - - \ No newline at end of file