From 0511e7fbbfa4ba41940d33b687b1cc90227b4eb8 Mon Sep 17 00:00:00 2001 From: Praveen Date: Mon, 2 May 2022 11:35:15 +0200 Subject: [PATCH] Changed BAI as optional output to handle large genome --- modules/gatk4/markduplicates/main.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/gatk4/markduplicates/main.nf b/modules/gatk4/markduplicates/main.nf index e8a98156..2650925b 100644 --- a/modules/gatk4/markduplicates/main.nf +++ b/modules/gatk4/markduplicates/main.nf @@ -12,7 +12,7 @@ process GATK4_MARKDUPLICATES { output: tuple val(meta), path("*.bam") , emit: bam - tuple val(meta), path("*.bai") , emit: bai + tuple val(meta), path("*.bai") , optional:true, emit: bai tuple val(meta), path("*.metrics"), emit: metrics path "versions.yml" , emit: versions