millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 19:18:17 +00:00
Code Issues Releases Packages Activity

Update software/ivar/consensus/main.nf

Browse source
This commit is contained in:
Harshil Patel 2021-02-12 23:02:04 +00:00 committed by GitHub
parent 9e4539473e
commit 0580fd8ded
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 0 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

1
software/ivar/consensus/main.nf
View file

@ -32,7 +32,6 @@ process IVAR_CONSENSUS {
def software = getSoftwareName(task.process)
def prefix = options.suffix ? "${meta.id}${options.suffix}" : "${meta.id}"
def save_mpileup = params.save_mpileup ? "tee ${prefix}.mpileup |" : ""
"""
samtools mpileup \\
--fasta-ref $fasta \\