From 0683efc67929856c1029d247f55f283cf6f1e1c1 Mon Sep 17 00:00:00 2001 From: drpatelh Date: Wed, 3 Feb 2021 17:36:06 +0000 Subject: [PATCH] Fix salmon quant tests --- tests/software/salmon/quant/main.nf | 4 ++-- tests/software/salmon/quant/test.yml | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/tests/software/salmon/quant/main.nf b/tests/software/salmon/quant/main.nf index bc973ed3..7ee8a047 100644 --- a/tests/software/salmon/quant/main.nf +++ b/tests/software/salmon/quant/main.nf @@ -14,7 +14,7 @@ workflow test_salmon_quant_single_end { file("${launchDir}/tests/data/fastq/rna/sarscov2/EPI_ISL_486436_1.fastq.gz", checkIfExists: true) ] SALMON_INDEX ( genome_fasta, transcript_fasta ) - SALMON_QUANT( input, SALMON_INDEX.out.index, gtf, transcript_fasta, false) + SALMON_QUANT ( input, SALMON_INDEX.out.index, gtf, transcript_fasta, false ) } @@ -28,6 +28,6 @@ workflow test_salmon_quant_paired_end { file("${launchDir}/tests/data/fastq/rna/sarscov2/EPI_ISL_486436_2.fastq.gz", checkIfExists: true) ] ] SALMON_INDEX ( genome_fasta, transcript_fasta ) - SALMON_QUANT( input, SALMON_INDEX.out.index, gtf, transcript_fasta, false) + SALMON_QUANT ( input, SALMON_INDEX.out.index, gtf, transcript_fasta, false ) } \ No newline at end of file diff --git a/tests/software/salmon/quant/test.yml b/tests/software/salmon/quant/test.yml index a7ef3f5e..021abdf3 100644 --- a/tests/software/salmon/quant/test.yml +++ b/tests/software/salmon/quant/test.yml @@ -53,7 +53,7 @@ md5sum: b08095ac70f89efc3146cdf488d0eb73 - name: salmon quant paired end - command: nextflow run ./tests/software/salmon -entry test_salmon_quant_paired_end -c tests/config/nextflow.config + command: nextflow run ./tests/software/salmon/quant -entry test_salmon_quant_paired_end -c tests/config/nextflow.config tags: - salmon - salmon_quant