From 070dee0f5bef37951493cf02dfec4c22472010d4 Mon Sep 17 00:00:00 2001 From: Thiseas Christos Lamnidis Date: Mon, 23 May 2022 15:22:22 +0200 Subject: [PATCH] Use newly added test bam --- tests/modules/sexdeterrmine/main.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/modules/sexdeterrmine/main.nf b/tests/modules/sexdeterrmine/main.nf index 2c90d280..056c63d5 100644 --- a/tests/modules/sexdeterrmine/main.nf +++ b/tests/modules/sexdeterrmine/main.nf @@ -9,7 +9,7 @@ workflow test_sexdeterrmine { input = [ [ id:'test', single_end:false ], // meta map - file("https://github.com/nf-core/test-datasets/raw/eager/testdata/Human/bam/JK2067_downsampled_s0.1.bam", checkIfExists: true) ] + file(params.test_data['homo_sapiens']['illumina']['test3.single_end.markduplicates.sorted.bam'], checkIfExists: true) ] SAMTOOLS_DEPTH ( input ) SEXDETERRMINE ( SAMTOOLS_DEPTH.out.tsv, [] )