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Bump ataqv version (#1860)

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* Bump ataqv version

* Remove check for empty file
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Jose Espinosa-Carrasco 2022-07-07 17:39:54 +02:00 committed by GitHub
parent 682f789f93
commit 0825fff505
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2 changed files with 3 additions and 4 deletions
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6
modules/ataqv/ataqv/main.nf
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@ -2,10 +2,10 @@ process ATAQV_ATAQV {
tag "$meta.id" tag "$meta.id"
label 'process_medium' label 'process_medium'
conda (params.enable_conda ? "bioconda::ataqv=1.2.1" : null) conda (params.enable_conda ? "bioconda::ataqv=1.3.0" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/ataqv:1.2.1--py39ha23c084_2' : 'https://depot.galaxyproject.org/singularity/ataqv:1.3.0--py39hccc85d7_2' :
'quay.io/biocontainers/ataqv:1.2.1--py39ha23c084_2' }" 'quay.io/biocontainers/ataqv:1.3.0--py39hccc85d7_2' }"
input: input:
tuple val(meta), path(bam), path(bai), path(peak_file) tuple val(meta), path(bam), path(bai), path(peak_file)

1
tests/modules/ataqv/ataqv/test.yml
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@ -15,7 +15,6 @@
- ataqv/ataqv - ataqv/ataqv
files: files:
- path: output/ataqv/1.problems - path: output/ataqv/1.problems
md5sum: d41d8cd98f00b204e9800998ecf8427e
- path: output/ataqv/test.ataqv.json - path: output/ataqv/test.ataqv.json
contains: contains:
- '"forward_mate_reads": 101' - '"forward_mate_reads": 101'