Update meta for seqret

This commit is contained in:
Thomas A. Christensen II 2022-07-18 09:37:10 -05:00
parent 8ab1f2a184
commit 09f9a09304
Signed by: millironx
GPG key ID: 139C07724802BC5D

View file

@ -1,51 +1,50 @@
name: "emboss_seqret"
## TODO nf-core: Add a description of the module and list keywords
description: write your description here
description: Reads in one or more sequences and writes them out again
keywords:
- sort
- emboss
- gff
- embl
- genbank
- fasta
- convert
- swissprot
tools:
- "emboss":
## TODO nf-core: Add a description and other details for the software below
description: "The European Molecular Biology Open Software Suite"
homepage: "None"
documentation: "None"
tool_dev_url: "None"
doi: ""
licence: "['GPL']"
homepage: "https://www.ebi.ac.uk/Tools/sfc/emboss_seqret/"
documentation: "https://emboss.bioinformatics.nl/cgi-bin/emboss/help/seqret"
tool_dev_url: "http://emboss.open-bio.org/"
doi: "10.1016/s0168-9525(00)02024-2 "
licence: ["GPL"]
## TODO nf-core: Add a description of all of the variables used as input
input:
# Only when we have meta
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
#
## TODO nf-core: Delete / customise this example input
- bam:
- sequence:
type: file
description: BAM/CRAM/SAM file
pattern: "*.{bam,cram,sam}"
description: Input sequence query
pattern: "*.{gff,em,gb,refseq,pir,swiss,sw,txt}"
- out_ext:
type: string
description: File extension of the output file. Unless otherwise set by a flag in `ext.args`, the extension dictates the output file format.
## TODO nf-core: Add a description of all of the variables used as output
output:
#Only when we have meta
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
#
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
## TODO nf-core: Delete / customise this example output
- bam:
- outseq:
type: file
description: Sorted BAM/CRAM/SAM file
pattern: "*.{bam,cram,sam}"
description: Converted sequence file
pattern: "*"
authors:
- "@MillironX"