diff --git a/.github/workflows/pytest-workflow.yml b/.github/workflows/pytest-workflow.yml index 6428c50d..984d0164 100644 --- a/.github/workflows/pytest-workflow.yml +++ b/.github/workflows/pytest-workflow.yml @@ -25,7 +25,7 @@ jobs: matrix: nxf_version: ['20.11.0-edge'] tags: ['${{ fromJson(needs.changes.outputs.modules) }}'] - profile: ['docker'] ## 'conda', 'singularity' + profile: ['docker', 'singularity'] ## 'conda' env: NXF_ANSI_LOG: false steps: @@ -65,7 +65,7 @@ jobs: if: matrix.profile == 'singularity' uses: eWaterCycle/setup-singularity@v5 with: - singularity-version: 3.5.3 + singularity-version: 3.7.1 - name: Setup miniconda if: matrix.profile == 'conda' @@ -80,7 +80,7 @@ jobs: # Test the module - name: Run pytest-workflow - run: PROFILE=${{ matrix.profile }} pytest --tag ${{ matrix.tags }} --symlink --wt 2 --kwdof + run: TMPDIR=~ PROFILE=${{ matrix.profile }} pytest --tag ${{ matrix.tags }} --symlink --wt 2 --kwdof - name: Upload logs on failure if: failure()