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added test yml and md5s

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kevinmenden 2020-12-09 16:54:11 +01:00
parent 42020ce5ac
commit 0d7c8276b7
1 changed files with 36 additions and 12 deletions
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48
tests/software/bowtie/test.yml
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@ -4,17 +4,17 @@
- bowtie - bowtie
- bowtie_index - bowtie_index
files: files:
- path: output/bowtie/NC_010473.index.1.ebwt - path: output/bowtie/bowtie/NC_010473.index.1.ebwt
md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
- path: output/bowtie/NC_010473.index.2.ebwt - path: output/bowtie/bowtie/NC_010473.index.2.ebwt
md5sum: bfd10c5319c6a0dbc540fd789254a5dd md5sum: bfd10c5319c6a0dbc540fd789254a5dd
- path: output/bowtie/NC_010473.index.3.ebwt - path: output/bowtie/bowtie/NC_010473.index.3.ebwt
md5sum: cd201e81724f3099131aec16ef2cc53b md5sum: cd201e81724f3099131aec16ef2cc53b
- path: output/bowtie/NC_010473.index.4.ebwt - path: output/bowtie/bowtie/NC_010473.index.4.ebwt
md5sum: bbb9d6d21ad765d135f95290204e8433 md5sum: bbb9d6d21ad765d135f95290204e8433
- path: output/bowtie/NC_010473.index.rev.1.ebwt - path: output/bowtie/bowtie/NC_010473.index.rev.1.ebwt
md5sum: 44f719c2fe42e1f35d54e798775846d1 md5sum: 44f719c2fe42e1f35d54e798775846d1
- path: output/bowtie/NC_010473.index.rev.2.ebwt - path: output/bowtie/bowtie/NC_010473.index.rev.2.ebwt
md5sum: f3c398bba5158f4039334a932d79c051 md5sum: f3c398bba5158f4039334a932d79c051
- name: Run bowtie index and align signle-end - name: Run bowtie index and align signle-end
@ -23,20 +23,44 @@
- bowtie - bowtie
- bowtie_align - bowtie_align
files: files:
- path: output/bowtie/NC_010473.index.1.ebwt - path: output/bowtie/bowtie/NC_010473.index.1.ebwt
md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
- path: output/bowtie/NC_010473.index.2.ebwt - path: output/bowtie/bowtie/NC_010473.index.2.ebwt
md5sum: bfd10c5319c6a0dbc540fd789254a5dd md5sum: bfd10c5319c6a0dbc540fd789254a5dd
- path: output/bowtie/NC_010473.index.3.ebwt - path: output/bowtie/bowtie/NC_010473.index.3.ebwt
md5sum: cd201e81724f3099131aec16ef2cc53b md5sum: cd201e81724f3099131aec16ef2cc53b
- path: output/bowtie/NC_010473.index.4.ebwt - path: output/bowtie/bowtie/NC_010473.index.4.ebwt
md5sum: bbb9d6d21ad765d135f95290204e8433 md5sum: bbb9d6d21ad765d135f95290204e8433
- path: output/bowtie/NC_010473.index.rev.1.ebwt - path: output/bowtie/bowtie/NC_010473.index.rev.1.ebwt
md5sum: 44f719c2fe42e1f35d54e798775846d1 md5sum: 44f719c2fe42e1f35d54e798775846d1
- path: output/bowtie/NC_010473.index.rev.2.ebwt - path: output/bowtie/bowtie/NC_010473.index.rev.2.ebwt
md5sum: f3c398bba5158f4039334a932d79c051 md5sum: f3c398bba5158f4039334a932d79c051
- path: output/bowtie/test.out - path: output/bowtie/test.out
md5sum: 6edce9d0d8ad7f5ce837a5be7e0d7fbe md5sum: 6edce9d0d8ad7f5ce837a5be7e0d7fbe
- path: output/bowtie/test.sam - path: output/bowtie/test.sam
md5sum: acdb36ea915ac2ac71b69a0b704d9d8a md5sum: acdb36ea915ac2ac71b69a0b704d9d8a
- name: Run bowtie index and align paired_end
command: nextflow run ./tests/software/bowtie -profile docker -entry test_bowtie_alignment_paired_end -c tests/config/nextflow.config
tags:
- bowtie
- bowtie_align
files:
- path: output/bowtie/bowtie/NC_010473.index.1.ebwt
md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
- path: output/bowtie/bowtie/NC_010473.index.2.ebwt
md5sum: bfd10c5319c6a0dbc540fd789254a5dd
- path: output/bowtie/bowtie/NC_010473.index.3.ebwt
md5sum: cd201e81724f3099131aec16ef2cc53b
- path: output/bowtie/bowtie/NC_010473.index.4.ebwt
md5sum: bbb9d6d21ad765d135f95290204e8433
- path: output/bowtie/bowtie/NC_010473.index.rev.1.ebwt
md5sum: 44f719c2fe42e1f35d54e798775846d1
- path: output/bowtie/bowtie/NC_010473.index.rev.2.ebwt
md5sum: f3c398bba5158f4039334a932d79c051
- path: output/bowtie/test.out
md5sum: 6edce9d0d8ad7f5ce837a5be7e0d7fbe
- path: output/bowtie/test.sam
md5sum: d41d8cd98f00b204e9800998ecf8427e