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Create index in bwa directory

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drpatelh 2021-02-02 12:34:23 +00:00
parent f126200610
commit 0d8bd42cca
1 changed files with 2 additions and 1 deletions
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3
software/bwa/index/main.nf
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@ -28,7 +28,8 @@ process BWA_INDEX {
script: script:
def software = getSoftwareName(task.process) def software = getSoftwareName(task.process)
""" """
bwa index $options.args $fasta mkdir bwa
bwa index $options.args bwa/${fasta.baseName}
echo \$(bwa 2>&1) | sed 's/^.*Version: //; s/Contact:.*\$//' > ${software}.version.txt echo \$(bwa 2>&1) | sed 's/^.*Version: //; s/Contact:.*\$//' > ${software}.version.txt
""" """
} }