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Create index in bwa directory
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1 changed files with 2 additions and 1 deletions
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@ -28,7 +28,8 @@ process BWA_INDEX {
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script:
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def software = getSoftwareName(task.process)
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"""
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bwa index $options.args $fasta
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mkdir bwa
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bwa index $options.args bwa/${fasta.baseName}
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echo \$(bwa 2>&1) | sed 's/^.*Version: //; s/Contact:.*\$//' > ${software}.version.txt
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"""
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}
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