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fix added correct entry workflow in test.yml

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This commit is contained in:
Lucpen 2022-05-06 15:26:34 +02:00
parent 1f906a7c6a
commit 0fa36e6777
5 changed files with 5 additions and 5 deletions
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2
tests/modules/gatk4/mergebamalignment/test.yml
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@ -9,7 +9,7 @@
- path: output/gatk4/versions.yml - path: output/gatk4/versions.yml
- name: gatk4 mergebamalignment test_gatk4_mergebamalignment_stubs - name: gatk4 mergebamalignment test_gatk4_mergebamalignment_stubs
command: nextflow run ./tests/modules/gatk4/mergebamalignment -entry test_gatk4_mergebamalignment -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/mergebamalignment/nextflow.config -stub-run command: nextflow run ./tests/modules/gatk4/mergebamalignment -entry test_gatk4_mergebamalignment_stubs -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/mergebamalignment/nextflow.config -stub-run
tags: tags:
- gatk4 - gatk4
- gatk4/mergebamalignment - gatk4/mergebamalignment

2
tests/modules/gatk4/mutect2/test.yml
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@ -71,7 +71,7 @@
- path: output/gatk4/versions.yml - path: output/gatk4/versions.yml
- name: gatk4 mutect2 test_gatk4_mutect2_tumor_normal_pair_f1r2_stubs - name: gatk4 mutect2 test_gatk4_mutect2_tumor_normal_pair_f1r2_stubs
command: nextflow run ./tests/modules/gatk4/mutect2 -entry test_gatk4_mutect2_tumor_normal_pair_f1r2 -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/mutect2/nextflow.config -stub-run command: nextflow run ./tests/modules/gatk4/mutect2 -entry test_gatk4_mutect2_tumor_normal_pair_f1r2_stubs -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/mutect2/nextflow.config -stub-run
tags: tags:
- gatk4 - gatk4
- gatk4/mutect2 - gatk4/mutect2

2
tests/modules/gatk4/revertsam/test.yml
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@ -9,7 +9,7 @@
- path: output/gatk4/versions.yml - path: output/gatk4/versions.yml
- name: gatk4 revertsam test_gatk4_revertsam_stubs - name: gatk4 revertsam test_gatk4_revertsam_stubs
command: nextflow run ./tests/modules/gatk4/revertsam -entry test_gatk4_revertsam -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/revertsam/nextflow.config -stub-run command: nextflow run ./tests/modules/gatk4/revertsam -entry test_gatk4_revertsam_stubs -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/revertsam/nextflow.config -stub-run
tags: tags:
- gatk4 - gatk4
- gatk4/revertsam - gatk4/revertsam

2
tests/modules/gatk4/samtofastq/test.yml
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@ -21,7 +21,7 @@
- path: output/gatk4/versions.yml - path: output/gatk4/versions.yml
- name: gatk4 samtofastq test_gatk4_samtofastq_paired_end_stubs - name: gatk4 samtofastq test_gatk4_samtofastq_paired_end_stubs
command: nextflow run ./tests/modules/gatk4/samtofastq -entry test_gatk4_samtofastq_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/samtofastq/nextflow.config -stub-run command: nextflow run ./tests/modules/gatk4/samtofastq -entry test_gatk4_samtofastq_paired_end_stubs -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/samtofastq/nextflow.config -stub-run
tags: tags:
- gatk4 - gatk4
- gatk4/samtofastq - gatk4/samtofastq

2
tests/modules/samtools/view/test.yml
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@ -16,7 +16,7 @@
- path: output/samtools/test.cram - path: output/samtools/test.cram
- name: samtools view test_samtools_view_stubs - name: samtools view test_samtools_view_stubs
command: nextflow run ./tests/modules/samtools/view -entry test_samtools_view -c ./tests/config/nextflow.config -c ./tests/modules/samtools/view/nextflow.config -stub-run command: nextflow run ./tests/modules/samtools/view -entry test_samtools_view_stubs -c ./tests/config/nextflow.config -c ./tests/modules/samtools/view/nextflow.config -stub-run
tags: tags:
- samtools/view - samtools/view
- samtools - samtools