millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 02:58:17 +00:00
Code Issues Releases Packages Activity

Revert PR #1147 (#1166)

Browse source 
* Revert PR #1147

* Fix md5sum for crai file
This commit is contained in:
Harshil Patel 2021-12-13 16:15:20 +00:00 committed by GitHub
parent 47a9cf8ecb
commit 0fafaeebf5
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
2 changed files with 5 additions and 8 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

11
modules/samtools/index/main.nf
View file

@ -11,13 +11,10 @@ process SAMTOOLS_INDEX {
tuple val(meta), path(input)
output:
tuple val(meta), path("*.bam" , includeInputs:true), path("*.bai") , optional:true, emit: bam_bai
tuple val(meta), path("*.bai") , optional:true, emit: bai
tuple val(meta), path("*.bam" , includeInputs:true), path("*.csi") , optional:true, emit: bam_csi
tuple val(meta), path("*.csi") , optional:true, emit: csi
tuple val(meta), path("*.cram", includeInputs:true), path("*.crai"), optional:true, emit: cram_crai
tuple val(meta), path("*.crai") , optional:true, emit: crai
path "versions.yml" , emit: versions
tuple val(meta), path("*.bai") , optional:true, emit: bai
tuple val(meta), path("*.csi") , optional:true, emit: csi
tuple val(meta), path("*.crai"), optional:true, emit: crai
path "versions.yml" , emit: versions
script:
def args = task.ext.args ?: ''

2
tests/modules/samtools/index/test.yml
View file

@ -14,7 +14,7 @@
- samtools/index
files:
- path: output/samtools/test.paired_end.recalibrated.sorted.cram.crai
md5sum: 537e3d8c937bcc4e34e1cf47cd71d484
md5sum: 14bc3bd5c89cacc8f4541f9062429029
- name: samtools index test_samtools_index_csi
command: nextflow run ./tests/modules/samtools/index -entry test_samtools_index_csi -c ./tests/config/nextflow.config -c ./tests/modules/samtools/index/nextflow.config