millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-13 05:13:09 +00:00
Code Issues Releases Packages Activity

Fix conda antismash path

Browse source
This commit is contained in:
jasmezz 2022-05-02 14:40:35 +02:00
parent 5cd517e759
commit 0fc352188b
1 changed files with 8 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

9
modules/antismash/antismashlitedownloaddatabases/main.nf
View file

@ -35,12 +35,19 @@ process ANTISMASH_ANTISMASHLITEDOWNLOADDATABASES {
script:
def args = task.ext.args ?: ''
conda = params.enable_conda
"""
download-antismash-databases \\
--database-dir antismash_db \\
$args
cp -r /usr/local/lib/python3.8/site-packages/antismash antismash_dir
if [[ $conda = false ]]; \
then \
cp -r /usr/local/lib/python3.8/site-packages/antismash antismash_dir; \
else \
antismash_path=\$(python -c 'import antismash;print(antismash.__file__.split("__")[0])') \
cp -r \$antismash_path antismash_dir; \
fi
cat <<-END_VERSIONS > versions.yml
"${task.process}":