diff --git a/software/bedtools/genomecov/main.nf b/software/bedtools/genomecov/main.nf index 833f6e80..f8f354f2 100644 --- a/software/bedtools/genomecov/main.nf +++ b/software/bedtools/genomecov/main.nf @@ -5,7 +5,7 @@ process GENOMECOV { input: path (bam) - path (fasta_sizes) + path (chrom_sizes) val (genomecov_args) output: @@ -13,6 +13,6 @@ process GENOMECOV { script: """ - bedtools genomecov -ibam ${bam} -g ${fasta_sizes} ${genomecov_args} + bedtools genomecov -ibam ${bam} -g ${chrom_sizes} ${genomecov_args} """ } diff --git a/software/bedtools/genomecov/meta.yml b/software/bedtools/genomecov/meta.yml index 0845cdb9..d06ecf9c 100644 --- a/software/bedtools/genomecov/meta.yml +++ b/software/bedtools/genomecov/meta.yml @@ -15,7 +15,7 @@ input: type: file description: Input genomic coordinates file pattern: "*.{bam}" - - fasta_sizes: + - chrom_sizes: type: file description: Genome chromosome sizes pattern: "*.{txt,sizes}"