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Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>
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Matthias De Smet 2022-06-08 14:24:55 +02:00 committed by GitHub
parent 71e3056813
commit 100b3f244c
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2 changed files with 5 additions and 4 deletions
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2
modules/multiqc/main.nf
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@ -21,7 +21,7 @@ process MULTIQC {
script: script:
def args = task.ext.args ?: '' def args = task.ext.args ?: ''
def config = multiqc_config ?: '--config $multiqc_config' def config = multiqc_config ?: "--config $multiqc_config"
""" """
multiqc \ multiqc \
--force \ --force \

7
tests/modules/multiqc/main.nf
View file

@ -16,9 +16,10 @@ workflow test_multiqc {
} }
workflow test_multiqc_fn_collision { workflow test_multiqc_fn_collision {
fqc_input = [ [ id: 'test', single_end: false ], fqc_input = [
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true)] [ id: 'test', single_end: false ],
] [ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true)]
]
mqc_input = Channel.empty() mqc_input = Channel.empty()
FASTQC ( fqc_input ) FASTQC ( fqc_input )