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Conda not suported

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This commit is contained in:
Rike 2022-05-18 14:26:21 +02:00
parent 05837a011d
commit 10840a0562
1 changed files with 4 additions and 1 deletions
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5
modules/gatk4/cnnscorevariants/main.nf
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@ -2,7 +2,10 @@ process GATK4_CNNSCOREVARIANTS {
tag "$meta.id"
label 'process_low'
conda (params.enable_conda ? "bioconda::gatk4=4.2.6.1" : null)
//Conda is not supported at the moment: https://github.com/broadinstitute/gatk/issues/7811
if (params.enable_conda) {
exit 1, "Conda environments cannot be used for GATK4/CNNScoreVariants at the moment. Please use docker or singularity containers."
}
container 'broadinstitute/gatk:4.2.6.1' //Biocontainers is missing a package
input: