millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 11:08:17 +00:00
Code Issues Releases Packages Activity

Conda not suported

Browse source
This commit is contained in:
Rike 2022-05-18 14:26:21 +02:00
parent 05837a011d
commit 10840a0562
1 changed files with 4 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

5
modules/gatk4/cnnscorevariants/main.nf
View file

@ -2,7 +2,10 @@ process GATK4_CNNSCOREVARIANTS {
tag "$meta.id" tag "$meta.id"
label 'process_low' label 'process_low'
conda (params.enable_conda ? "bioconda::gatk4=4.2.6.1" : null) //Conda is not supported at the moment: https://github.com/broadinstitute/gatk/issues/7811
if (params.enable_conda) {
exit 1, "Conda environments cannot be used for GATK4/CNNScoreVariants at the moment. Please use docker or singularity containers."
}
container 'broadinstitute/gatk:4.2.6.1' //Biocontainers is missing a package container 'broadinstitute/gatk:4.2.6.1' //Biocontainers is missing a package
input: input: