diff --git a/software/ivar/trim/meta.yml b/software/ivar/trim/meta.yml index 4b72d968..9d8d39df 100644 --- a/software/ivar/trim/meta.yml +++ b/software/ivar/trim/meta.yml @@ -39,8 +39,12 @@ input: e.g. [ id:'test', single_end:false ] - bam: type: file - description: A sorted (with samtools sort) bam file + description: Co-ordinate sorted BAM file pattern: "*.bam" + - bai: + type: file + description: Index file for co-ordinate sorted BAM file + pattern: "*.bai" - bed: type: file description: BED file with primer labels and positions @@ -55,6 +59,10 @@ output: type: file description: iVar generated trimmed bam file (unsorted) pattern: "*.bam" + - log: + type: file + description: Log file generated by iVar for use with MultiQC + pattern: "*.log" - version: type: file description: File containing software version