diff --git a/tests/software/phantompeakqualtools/main.nf b/tests/software/phantompeakqualtools/main.nf
new file mode 100644
index 00000000..6702c859
--- /dev/null
+++ b/tests/software/phantompeakqualtools/main.nf
@@ -0,0 +1,12 @@
+#!/usr/bin/env nextflow
+
+nextflow.enable.dsl = 2
+
+include { PHANTOMPEAKQUALTOOLS } from '../../../software/phantompeakqualtools/main.nf' addParams(options: [publish_dir: 'test_phantompeakqualtools'])
+
+workflow test_phantompeakqualtools {
+    def input = []
+    input = [ [ id:'test', single_end:true ], // meta map
+              [ file("${launchDir}/tests/data/bam/test/test.single_end.sorted.bam", checkIfExists: true) ] ]
+    PHANTOMPEAKQUALTOOLS ( input )
+}
diff --git a/tests/software/phantompeakqualtools/test.yml b/tests/software/phantompeakqualtools/test.yml
new file mode 100644
index 00000000..d1d1dd05
--- /dev/null
+++ b/tests/software/phantompeakqualtools/test.yml
@@ -0,0 +1,8 @@
+- name: Run phantompeakqualtools  test workflow
+  command: nextflow run ./tests/software/phantompeakqualtools/ -profile docker -entry test_phantompeakqualtools -c tests/config/nextflow.config
+  tags:
+    - phantompeakqualtools
+  files:
+    - path: output/phantompeakqualtools/test.single_end.sorted.bam.out
+    - path: output/phantompeakqualtools/test.single_end.sorted.bam.pdf
+    - path: output/phantompeakqualtools/test.single_end.sorted.bam.Rdata