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Add basedir

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This commit is contained in:
drpatelh 2020-08-07 09:40:02 +01:00
parent 75e7e1573c
commit 111b1505fa
1 changed files with 3 additions and 2 deletions
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5
software/fastqc/test/main.nf
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@ -15,7 +15,7 @@ workflow test_single_end {
def input = []
input = [ [ id:'test', single_end:true ],
[ file('input/test_single_end.fastq.gz', checkIfExists: true) ] ]
[ file("${baseDir}/input/test_single_end.fastq.gz", checkIfExists: true) ] ]
FASTQC ( input, [ publish_dir:'test_single_end' ] )
}
@ -27,7 +27,8 @@ workflow test_paired_end {
def input = []
input = [ [ id:'test', single_end:false ],
[ file('input/test_R1.fastq.gz', checkIfExists: true), file('input/test_R2.fastq.gz', checkIfExists: true) ] ]
[ file("${baseDir}/input/test_R1.fastq.gz", checkIfExists: true),
file("${baseDir}/input/test_R2.fastq.gz", checkIfExists: true) ] ]
FASTQC ( input, [ publish_dir:'test_paired_end' ] )
}