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Bump Pangolin version to 3.1.20 (#1296)

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* Bump Pangolin version to 3.1.20

* Fix md5sum
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Harshil Patel 2022-02-15 10:46:20 +00:00 committed by GitHub
parent 967fb22ded
commit 12b0bc5aa9
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2 changed files with 4 additions and 4 deletions
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6
modules/pangolin/main.nf
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@ -2,10 +2,10 @@ process PANGOLIN {
tag "$meta.id" tag "$meta.id"
label 'process_medium' label 'process_medium'
conda (params.enable_conda ? 'bioconda::pangolin=3.1.19' : null) conda (params.enable_conda ? 'bioconda::pangolin=3.1.20' : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/pangolin:3.1.19--pyhdfd78af_0' : 'https://depot.galaxyproject.org/singularity/pangolin:3.1.20--pyhdfd78af_0' :
'quay.io/biocontainers/pangolin:3.1.19--pyhdfd78af_0' }" 'quay.io/biocontainers/pangolin:3.1.20--pyhdfd78af_0' }"
input: input:
tuple val(meta), path(fasta) tuple val(meta), path(fasta)

2
tests/modules/pangolin/test.yml
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@ -4,4 +4,4 @@
- pangolin - pangolin
files: files:
- path: ./output/pangolin/test.pangolin.csv - path: ./output/pangolin/test.pangolin.csv
md5sum: d92ede51bf3886f696f2089e86189125 md5sum: 378f211c219bb644dea63adf7c3254fe