From 137d00b5239fd4783a565b75616849dac8e7b5ff Mon Sep 17 00:00:00 2001
From: drpatelh <drhpatel@gmail.com>
Date: Fri, 5 Feb 2021 10:44:08 +0000
Subject: [PATCH] Fix tests

---
 tests/software/bwa/index/test.yml | 10 +++++-----
 tests/software/bwa/mem/test.yml   |  4 ++--
 2 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/tests/software/bwa/index/test.yml b/tests/software/bwa/index/test.yml
index 89fe3f87..0e7decdf 100644
--- a/tests/software/bwa/index/test.yml
+++ b/tests/software/bwa/index/test.yml
@@ -4,11 +4,11 @@
     - bwa
     - bwa_index
   files:
-    - path: output/bwa/NC_010473.fa.amb
+    - path: output/bwa/bwa/NC_010473.amb
       md5sum: 942a990ae872f1c0b8d72dda2db405d5
-    - path: output/bwa/NC_010473.fa.bwt
+    - path: output/bwa/bwa/NC_010473.bwt
       md5sum: 7301b52e2ecb893d429a49fa692447ae
-    - path: output/bwa/NC_010473.fa.pac
+    - path: output/bwa/bwa/NC_010473.pac
       md5sum: 4d5e6fc45bbc968f7f859e9ca2cc89ad
-    - path: output/bwa/NC_010473.fa.sa
-      md5sum: a47dcc92e750e2f16fbd979b8ff9538e
\ No newline at end of file
+    - path: output/bwa/bwa/NC_010473.sa
+      md5sum: a47dcc92e750e2f16fbd979b8ff9538e
diff --git a/tests/software/bwa/mem/test.yml b/tests/software/bwa/mem/test.yml
index decf2e44..b4c2f4f8 100644
--- a/tests/software/bwa/mem/test.yml
+++ b/tests/software/bwa/mem/test.yml
@@ -6,7 +6,7 @@
     - bwa_mem_single_end
   files:
     - path: output/bwa/test.bam
-      md5sum: 3ee21210bac387e0335008146e4728bc
+      md5sum: 52e81e5bd523d0b27fe533b21a0d80f5
 
 - name: bwa mem paired-end
   command: nextflow run ./tests/software/bwa/mem -entry test_bwa_mem_paired_end -c tests/config/nextflow.config
@@ -16,4 +16,4 @@
     - bwa_mem_paired_end
   files:
     - path: output/bwa/test.bam
-      md5sum: 510d8acc6448c07cdacce8e64ec0904c
+      md5sum: 86d82fdb68ed384c656cfc62a253052f