From 1508596f14390897733942e44a11bd1c849a9ab7 Mon Sep 17 00:00:00 2001 From: Candice Date: Wed, 3 Jun 2020 11:22:27 +0200 Subject: [PATCH] luslab-umitools | Edited Dockerfile in umi_tools --- tools/umi_tools/Dockerfile | 12 +----------- 1 file changed, 1 insertion(+), 11 deletions(-) diff --git a/tools/umi_tools/Dockerfile b/tools/umi_tools/Dockerfile index 636c051a..9636793f 100644 --- a/tools/umi_tools/Dockerfile +++ b/tools/umi_tools/Dockerfile @@ -1,23 +1,13 @@ FROM continuumio/miniconda3:4.8.2 LABEL authors="chris.cheshire@crick.ac.uk" \ description="Docker image containing all requirements for the nf-core umi_tools module" - # Install apt packages RUN apt-get update \ && apt-get install -y --no-install-recommends \ - git=1:2.20.1-2+deb10u3 \ - apt-utils=1.8.2 \ - unzip=6.0-23+deb10u1 \ procps=2:3.3.15-2 \ - build-essential=12.6 \ - zlib1g-dev=1:1.2.11.dfsg-1 \ && apt-get clean \ && rm -rf /var/lib/apt/lists/* - # Install conda packages COPY environment.yml / RUN conda env create -f /environment.yml && conda clean -a -ENV PATH /opt/conda/envs/nfcore-umitools-0.1/bin:$PATH - -# Reset work dir -WORKDIR /home \ No newline at end of file +ENV PATH /opt/conda/envs/nfcore-umitools-0.1/bin:$PATH \ No newline at end of file