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Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
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SusiJo 2022-05-20 13:08:38 +02:00 committed by GitHub
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modules/cnvkit/batch/main.nf
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@ -34,7 +34,7 @@ process CNVKIT_BATCH {
// do not run samtools on normal samples in tumor_only mode // do not run samtools on normal samples in tumor_only mode
def normal_exists = normal ? true: false def normal_exists = normal ? true: false
// tumor_only mode does not need fasta & target // tumor_only mode does not need fasta & target
// instead it requires a pre-computed reference which is built from fasta & target // instead it requires a pre-computed reference.cnn which is built from fasta & target
def (normal_out, normal_args, fasta_args, target_args) = ["", "", "", ""] def (normal_out, normal_args, fasta_args, target_args) = ["", "", "", ""]
def reference_args = reference ? "--reference $reference" : "" def reference_args = reference ? "--reference $reference" : ""