millironx/nf-core_modules
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drpatelh 2020-08-06 12:57:53 +01:00
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@ -71,15 +71,19 @@ We have written a helper command in the `nf-core/tools` package that allows you
INFO Downloaded 3 files to ./modules/nf-core/software/fastqc modules.py:97
```
We have plans to add other utility commands to help developers install and maintain modules downloaded from this repository. e.g.
4. We have plans to add other utility commands to help developers install and maintain modules downloaded from this repository so watch this space!
```console
Commands:
list List available software modules.
install Add a DSL2 software wrapper module to a pipeline.
update Update one or all software wrapper modules. (NOT YET IMPLEMENTED)
remove Remove a software wrapper from a pipeline. (NOT YET IMPLEMENTED)
check Check that imported module code has not been modified. (NOT YET IMPLEMENTED)
```console
$ nf-core modules --help
...truncated...
Commands:
list List available software modules.
install Add a DSL2 software wrapper module to a pipeline.
update Update one or all software wrapper modules. (NOT YET IMPLEMENTED)
remove Remove a software wrapper from a pipeline. (NOT YET IMPLEMENTED)
check Check that imported module code has not been modified. (NOT YET IMPLEMENTED)
```
### Configuration and parameters