diff --git a/.github/workflows/seacr_callpeak.yml b/.github/workflows/seacr_callpeak.yml new file mode 100644 index 00000000..8d342495 --- /dev/null +++ b/.github/workflows/seacr_callpeak.yml @@ -0,0 +1,40 @@ +name: seacr_callpeak +on: + push: + paths: + - software/seacr/callpeak/** + - .github/workflows/seacr_callpeak.yml + - tests/software/seacr/** + pull_request: + paths: + - software/seacr/callpeak/** + - .github/workflows/seacr_callpeak.yml + - tests/software/seacr/** + +jobs: + ci_test: + runs-on: ubuntu-latest + strategy: + matrix: + nxf_version: [20.11.0-edge] + env: + NXF_ANSI_LOG: false + steps: + - uses: actions/checkout@v2 + + - name: Install Nextflow + env: + NXF_VER: ${{ matrix.nxf_version }} + run: | + wget -qO- get.nextflow.io | bash + sudo mv nextflow /usr/local/bin/ + + - name: Set up Python + uses: actions/setup-python@v2 + with: + python-version: "3.x" + - name: Install dependencies + run: python -m pip install --upgrade pip pytest-workflow + + # Test the module + - run: pytest --tag samtools_flagstat --symlink --wt 2