From 15fbf21b28a13cfaa043cfbdc12a9538c87ff4f4 Mon Sep 17 00:00:00 2001
From: Rike <friederike.hanssen@qbic.uni-tuebingen.de>
Date: Thu, 12 May 2022 16:16:53 +0200
Subject: [PATCH] double tmpdir args removed, porb leftover after massive
 refactor where we decided to make it mandatory everywhere

---
 tests/modules/gatk4/combinegvcfs/nextflow.config | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/tests/modules/gatk4/combinegvcfs/nextflow.config b/tests/modules/gatk4/combinegvcfs/nextflow.config
index 573cc13e..8730f1c4 100644
--- a/tests/modules/gatk4/combinegvcfs/nextflow.config
+++ b/tests/modules/gatk4/combinegvcfs/nextflow.config
@@ -1,6 +1,5 @@
 process {
 
-    ext.args = "--tmp-dir ."
     publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
-    
-}
\ No newline at end of file
+
+}