diff --git a/tests/modules/roary/test.yml b/tests/modules/roary/test.yml
index d844a430..b6f02593 100644
--- a/tests/modules/roary/test.yml
+++ b/tests/modules/roary/test.yml
@@ -28,12 +28,12 @@
     - path: output/roary/results/gene_presence_absence.csv
       contains: ['"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences"']
     - path: output/roary/results/number_of_conserved_genes.Rtab
-      contains: ["279"]
+      contains: ["2"]
     - path: output/roary/results/number_of_genes_in_pan_genome.Rtab
-      contains: ["279"]
+      contains: ["2"]
     - path: output/roary/results/number_of_new_genes.Rtab
-      contains: ["279"]
+      contains: ["2"]
     - path: output/roary/results/number_of_unique_genes.Rtab
-      contains: ["279"]
+      contains: ["2"]
     - path: output/roary/results/summary_statistics.txt
       md5sum: 3921b5445df6a7ed59408119b8860a58