From 175ea9b7f95a0e2fd3679f7a052c6dcb60b61a6e Mon Sep 17 00:00:00 2001
From: Rike <friederike.hanssen@qbic.uni-tuebingen.de>
Date: Mon, 23 May 2022 12:15:33 +0200
Subject: [PATCH] fix version

---
 modules/gatk4/filtervarianttranches/main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/gatk4/filtervarianttranches/main.nf b/modules/gatk4/filtervarianttranches/main.nf
index 03323744..98e620e7 100644
--- a/modules/gatk4/filtervarianttranches/main.nf
+++ b/modules/gatk4/filtervarianttranches/main.nf
@@ -45,7 +45,7 @@ process GATK4_FILTERVARIANTTRANCHES {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        gatk4: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//' ))
+        gatk4: \$(echo \$(gatk --version 2>&1) | sed 's/^.*(GATK) v//; s/ .*\$//')
     END_VERSIONS
     """
 }