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style: Run yaml-lint against files

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Edmund Miller 2020-11-13 13:16:55 -06:00 committed by sruthipsuresh
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software/bedtools/slop/meta.yml
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@ -1,79 +1,75 @@
name: bedtools_slop name: bedtools_slop
description: Adds a specified number of bases in each direction (unique values may be specified for either -l or -r) description: Adds a specified number of bases in each direction (unique values may be specified for either -l or -r)
keywords: keywords:
- bed - bed
- slopBed - slopBed
tools: tools:
- bedtools: - bedtools:
description: | description: |
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types. A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
documentation: https://bedtools.readthedocs.io/en/latest/ documentation: https://bedtools.readthedocs.io/en/latest/
params: params:
- l: - l:
type: integer type: integer
description: description: The number of base pairs to subtract from the start coordinate
The number of base pairs to subtract from the start coordinate - r:
- r: type: integer
type: integer description: The number of base pairs to add to the end coordinate
description: - b:
The number of base pairs to add to the end coordinate type: integer
-b: description: Increases the entry by the same number base pairs in each direction
type: integer - pct:
description: type: boolean
Increases the entry by the same number base pairs in each direction description: |
- pct: Define -l and -r as a fraction of the feature’s length. E.g. if used on a 1000bp feature, -l 0.50, will add 500 bp “upstream”. By default this is set to false.
type: boolean
description: |
Define -l and -r as a fraction of the feature’s length. E.g. if used on a 1000bp feature, -l 0.50, will add 500 bp “upstream”. Default = false.
- header: - header:
type: boolean type: boolean
description: | description: |
Print the header from the input file prior to results. Print the header from the input file prior to results.
- outdir: - outdir:
type: string type: string
description: | description: |
The pipeline's output directory. By default, the module will The pipeline's output directory. By default, the module will
output files into `$params.outdir/<SOFTWARE>` output files into `$params.outdir/<SOFTWARE>`
- publish_dir_mode: - publish_dir_mode:
type: string type: string
description: | description: |
Value for the Nextflow `publishDir` mode parameter. Value for the Nextflow `publishDir` mode parameter.
Available: symlink, rellink, link, copy, copyNoFollow, move. Available: symlink, rellink, link, copy, copyNoFollow, move.
- enable_conda: - enable_conda:
type: boolean type: boolean
description: | description: |
Run the module with Conda using the software specified Run the module with Conda using the software specified
via the `conda` directive via the `conda` directive
input: input:
- meta: - meta:
type: map type: map
description: | description: |
Groovy Map containing sample information Groovy Map containing sample information
e.g. [ id:'test', single_end:false ] e.g. [ id:'test', single_end:false ]
- bed: - bed:
type: file type: file
description: List of bed files description: List of bed files
pattern: "*.{bed}" pattern: "*.{bed}"
output: output:
- meta: - meta:
type: map type: map
description: | description: |
Groovy Map containing sample information Groovy Map containing sample information
e.g. [ id:'test', single_end:false ] e.g. [ id:'test', single_end:false ]
- bed: - bed:
type: file type: file
description: Edited bed file description: Edited bed file
pattern: "*.{slopbed}" pattern: "*.{slopbed}"
- version: - version:
type: file type: file
description: File containing software version description: File containing software version
pattern: "*.{version.txt}" pattern: "*.{version.txt}"
authors: authors: -"@Emiller88"
-"@Emiller88" -"@sruthipsuresh"
-"@sruthipsuresh"