millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-13 05:13:09 +00:00
Code Issues Releases Packages Activity

fix indent error, avoiding html tag confusion (#1393)

Browse source
This commit is contained in:
Matthias Hörtenhuber 2022-03-15 11:56:42 +01:00 committed by GitHub
parent d6244b42f5
commit 18e72fa0be
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 49 additions and 49 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

98
modules/controlfreec/meta.yml
View file

@ -17,57 +17,57 @@ tools:
input:
- args:
type: map
description: |
Groovy Map containing tool parameters. MUST follow the structure/keywords below and be provided via modules.config.
<optional> parameters can be removed from the map, if they are not set. All value must be surrounded by quotes, meta map parameters can be set with, i.e. sex = meta.sex:
For default values, please check the documentation above.
type: map
description: |
Groovy Map containing tool parameters. MUST follow the structure/keywords below and be provided via modules.config.
Parameters marked as (optional) can be removed from the map, if they are not set. All values must be surrounded by quotes, meta map parameters can be set with, i.e. `sex = meta.sex`:
For default values, please check the documentation above.
```
{
[
"general" :[
"bedgraphoutput": <optional>,
"breakpointthreshold": <optional>,
"breakpointtype": <optional>,
"coefficientofvariation": <optional>,
"contamination": <optional>,
"contaminationadjustment": <optional>,
"degree": <optional>,
"forcegccontentnormalization": <optional>,
"gccontentprofile": <optional>,
"intercept": <optional>,
"mincnalength": <optional>,
"minmappabilityperwindow": <optional>,
"minexpectedgc": <optional>,
"maxexpectedgc": <optional>,
"minimalsubclonepresence": <optional>,
"noisydata": <optional>,
"ploidy": <optional>,
"printNA": <optional>,
"readcountthreshold": <optional >,
"sex": <optional>,
"step": <optional value>,
"telocentromeric": <optional>,
"uniquematch": <optional>,
"window": <optional>
],
"control":[
"inputformat": <required>,
"mateorientation": <optional>,
],
"sample":[
"inputformat": <required>,
"mateorientation": <optional>,
],
"BAF":[
"minimalcoverageperposition": <optional>,
"minimalqualityperposition": <optional>,
"shiftinquality": <optional>
```
{
[
"general" :[
"bedgraphoutput": (optional),
"breakpointthreshold": (optional),
"breakpointtype": (optional),
"coefficientofvariation": (optional),
"contamination": (optional),
"contaminationadjustment": (optional),
"degree": (optional),
"forcegccontentnormalization": (optional),
"gccontentprofile": (optional),
"intercept": (optional),
"mincnalength": (optional),
"minmappabilityperwindow": (optional),
"minexpectedgc": (optional),
"maxexpectedgc": (optional),
"minimalsubclonepresence": (optional),
"noisydata": (optional),
"ploidy": (optional),
"printNA": (optional),
"readcountthreshold": (optional),
"sex": (optional),
"step": (optional),
"telocentromeric": (optional),
"uniquematch": (optional),
"window": (optional)
],
"control":[
"inputformat": (required),
"mateorientation": (optional),
],
"sample":[
"inputformat": (required),
"mateorientation": (optional),
],
"BAF":[
"minimalcoverageperposition": (optional),
"minimalqualityperposition": (optional),
"shiftinquality": (optional)
]
]
]
}
```
}
```
- meta:
type: map