diff --git a/tests/software/bwameth/align/test.yml b/tests/software/bwameth/align/test.yml
index bda59807..08feaa1f 100644
--- a/tests/software/bwameth/align/test.yml
+++ b/tests/software/bwameth/align/test.yml
@@ -5,7 +5,7 @@
     - bwameth_align
   files:
     - path: output/test_single_end/test.bam
-      md5sum: 1873323773a8508494e7edc3e2035113
+      md5sum: d56665d96a0ebb8e739ae41af8a37181
 
 - name: Run bwameth paired-end test workflow
   command: nextflow run ./tests/software/bwameth/align -entry test_bwameth_align_paired_end -c tests/config/nextflow.config
@@ -14,4 +14,4 @@
     - bwameth_align
   files:
     - path: output/test_paired_end/test.bam
-      md5sum: 1f32b10471468596359584ca9f476caf
+      md5sum: 58b918ddddc09866e13a1a45f22e7434