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fixed container definitions

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This commit is contained in:
Matthias De Smet 2022-05-06 10:44:51 +02:00
parent 77d825e043
commit 1c7205d683
2 changed files with 8 additions and 8 deletions
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8
modules/md5sum/main.nf
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@ -2,10 +2,10 @@ process MD5SUM {
tag "$meta.id" tag "$meta.id"
label 'process_low' label 'process_low'
if (params.enable_conda) { conda (params.enable_conda ? "conda-forge::coreutils=8.25" : null)
exit 1, "Conda environments cannot be used when using md5sum. Please use docker or singularity containers." container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
} 'https://depot.galaxyproject.org/singularity/coreutils:8.31--h14c3975_0' :
container "debian:bullseye-slim" 'quay.io/biocontainers/coreutils:8.31--h14c3975_0' }"
input: input:
tuple val(meta), path(file) tuple val(meta), path(file)

8
modules/shasum/main.nf
View file

@ -2,10 +2,10 @@ process SHASUM {
tag "$meta.id" tag "$meta.id"
label 'process_low' label 'process_low'
if (params.enable_conda) { conda (params.enable_conda ? "conda-forge::coreutils=8.25" : null)
exit 1, "Conda environments cannot be used when using sha256sum. Please use docker or singularity containers." container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
} 'https://depot.galaxyproject.org/singularity/coreutils:8.31--h14c3975_0' :
container "debian:bullseye-slim" 'quay.io/biocontainers/coreutils:8.31--h14c3975_0' }"
input: input:
tuple val(meta), path(file) tuple val(meta), path(file)