From dc4108fd9b9d2982d84d24a7f765e5c5a0d3364d Mon Sep 17 00:00:00 2001 From: Kevin Menden Date: Fri, 18 Dec 2020 09:13:35 +0100 Subject: [PATCH 1/3] Update software/bowtie/align/meta.yml Co-authored-by: Harshil Patel --- software/bowtie/align/meta.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/software/bowtie/align/meta.yml b/software/bowtie/align/meta.yml index 633ef56a..50f5e8d0 100644 --- a/software/bowtie/align/meta.yml +++ b/software/bowtie/align/meta.yml @@ -53,7 +53,7 @@ input: description: Bowtie genome index files pattern: "*.ebwt" output: - - sam: + - bam: type: file description: Output SAM file containing read alignments pattern: "*.{sam}" From a7f1ff29d7baf10417efc22dbc8de52dc8700ccc Mon Sep 17 00:00:00 2001 From: Kevin Menden Date: Fri, 18 Dec 2020 09:13:42 +0100 Subject: [PATCH 2/3] Update software/bowtie/align/meta.yml Co-authored-by: Harshil Patel --- software/bowtie/align/meta.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/software/bowtie/align/meta.yml b/software/bowtie/align/meta.yml index 50f5e8d0..b6909b61 100644 --- a/software/bowtie/align/meta.yml +++ b/software/bowtie/align/meta.yml @@ -56,7 +56,7 @@ output: - bam: type: file description: Output SAM file containing read alignments - pattern: "*.{sam}" + pattern: "*.{bam}" - version: type: file description: File containing software version From 7805d25cc56190ac1ad88f0634fb32458cbc4379 Mon Sep 17 00:00:00 2001 From: Kevin Menden Date: Fri, 18 Dec 2020 09:13:48 +0100 Subject: [PATCH 3/3] Update software/bowtie/align/meta.yml Co-authored-by: Harshil Patel --- software/bowtie/align/meta.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/software/bowtie/align/meta.yml b/software/bowtie/align/meta.yml index b6909b61..72f7c0b5 100644 --- a/software/bowtie/align/meta.yml +++ b/software/bowtie/align/meta.yml @@ -55,7 +55,7 @@ input: output: - bam: type: file - description: Output SAM file containing read alignments + description: Output BAM file containing read alignments pattern: "*.{bam}" - version: type: file