diff --git a/test-datasets b/test-datasets index be215c08..aae85a5c 160000 --- a/test-datasets +++ b/test-datasets @@ -1 +1 @@ -Subproject commit be215c0874e2485f0d8e12a6f0addf08f2cd08df +Subproject commit aae85a5c9c72238959108212481ce83bae569709 diff --git a/tools/cutadapt/test_single/main.nf b/tools/cutadapt/test_single/main.nf index 96947ad0..657e2428 100644 --- a/tools/cutadapt/test_single/main.nf +++ b/tools/cutadapt/test_single/main.nf @@ -5,10 +5,10 @@ include '../main.nf' params(params) // Define input channels readPaths = [ - ['SRR4238351', '../../../test-datasets/tools/fastqc/input/SRR4238351_subsamp.fastq.gz'], - ['SRR4238355', '../../../test-datasets/tools/fastqc/input/SRR4238355_subsamp.fastq.gz'], - ['SRR4238359', '../../../test-datasets/tools/fastqc/input/SRR4238359_subsamp.fastq.gz'], - ['SRR4238379', '../../../test-datasets/tools/fastqc/input/SRR4238379_subsamp.fastq.gz'] + ['SRR4238351', '../../../test-datasets/tools/cutadapt/input/SRR4238351_subsamp.fastq.gz'], + ['SRR4238355', '../../../test-datasets/tools/cutadapt/input/SRR4238355_subsamp.fastq.gz'], + ['SRR4238359', '../../../test-datasets/tools/cutadapt/input/SRR4238359_subsamp.fastq.gz'], + ['SRR4238379', '../../../test-datasets/tools/cutadapt/input/SRR4238379_subsamp.fastq.gz'] ] Channel .from(readPaths)