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update star/align to include an optional sam output (support for --chimOutType SeparateSAMold option) (#1378)

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Co-authored-by: Praveen Raj S <43108054+praveenraj2018@users.noreply.github.com>
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Annick Renevey 2022-03-23 13:13:58 +01:00 committed by GitHub
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commit 1dddf1ce94
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modules/star/align/main.nf
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@ -29,6 +29,7 @@ process STAR_ALIGN {
tuple val(meta), path('*fastq.gz') , optional:true, emit: fastq
tuple val(meta), path('*.tab') , optional:true, emit: tab
tuple val(meta), path('*.out.junction') , optional:true, emit: junction
tuple val(meta), path('*.out.sam') , optional:true, emit: sam
when:
task.ext.when == null || task.ext.when