millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2025-01-02 04:32:08 -05:00
Code Issues Releases Packages Activity

update star/align to include an optional sam output (support for --chimOutType SeparateSAMold option) (#1378)

Browse source 
Co-authored-by: Praveen Raj S <43108054+praveenraj2018@users.noreply.github.com>
This commit is contained in:
Annick Renevey 2022-03-23 13:13:58 +01:00 committed by GitHub
parent 9c386c5dd8
commit 1dddf1ce94
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 1 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

1
modules/star/align/main.nf
View file

@ -29,6 +29,7 @@ process STAR_ALIGN {
tuple val(meta), path('*fastq.gz') , optional:true, emit: fastq tuple val(meta), path('*fastq.gz') , optional:true, emit: fastq
tuple val(meta), path('*.tab') , optional:true, emit: tab tuple val(meta), path('*.tab') , optional:true, emit: tab
tuple val(meta), path('*.out.junction') , optional:true, emit: junction tuple val(meta), path('*.out.junction') , optional:true, emit: junction
tuple val(meta), path('*.out.sam') , optional:true, emit: sam
when: when:
task.ext.when == null || task.ext.when task.ext.when == null || task.ext.when