diff --git a/software/abacas/meta.yml b/software/abacas/meta.yml index 7f6c292c..d60afee0 100644 --- a/software/abacas/meta.yml +++ b/software/abacas/meta.yml @@ -6,7 +6,10 @@ keywords: - contiguate tools: - abacas: - description: ABACAS is intended to rapidly contiguate (align, order, orientate), visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence. + description: | + ABACAS is intended to rapidly contiguate (align, order, orientate), + visualize and design primers to close gaps on shotgun assembled + contigs based on a reference sequence. homepage: http://abacas.sourceforge.net/documentation.html documentation: http://abacas.sourceforge.net/documentation.html tool_dev_url: None @@ -35,9 +38,16 @@ output: Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - results: - type: file - description: Sorted BAM/CRAM/SAM file - pattern: "*.{bam,cram,sam}" + type: files + description: | + List containing abacas output files + [ 'test.abacas.bin', 'test.abacas.fasta', 'test.abacas.gaps', + 'test.abacas.gaps.tab', 'test.abacas.nucmer.delta', + 'test.abacas.nucmer.filtered.delta', 'test.abacas.nucmer.tiling', + 'test.abacas.tab', 'test.abacas.unused.contigs.out', + 'test.abacas.MULTIFASTA.fa' ] + pattern: "*.{abacas}*" + - version: type: file description: File containing software version