diff --git a/modules/homer/makeucscfile/main.nf b/modules/homer/makeucscfile/main.nf index c82435ea..379fad3d 100644 --- a/modules/homer/makeucscfile/main.nf +++ b/modules/homer/makeucscfile/main.nf @@ -13,8 +13,8 @@ process HOMER_MAKEUCSCFILE { tuple val(meta), path(tagDir) output: - tuple val(meta), path("tag_dir/*ucsc.bedGraph.gz"), emit: bedGraph - path "versions.yml" , emit: versions + tuple val(meta), path("*.bedGraph.gz"), emit: bedGraph + path "versions.yml" , emit: versions when: task.ext.when == null || task.ext.when @@ -25,7 +25,7 @@ process HOMER_MAKEUCSCFILE { """ makeUCSCfile \\ $tagDir \\ - -o auto \\ + -o ${prefix}.bedGraph \\ $args cat <<-END_VERSIONS > versions.yml diff --git a/modules/homer/makeucscfile/meta.yml b/modules/homer/makeucscfile/meta.yml index 273f456e..039fd37f 100644 --- a/modules/homer/makeucscfile/meta.yml +++ b/modules/homer/makeucscfile/meta.yml @@ -30,7 +30,7 @@ output: - bedGraph: type: file description: The UCSC bed graph - pattern: "tag_dir/*ucsc.bedGraph.gz" + pattern: "*.bedGraph.gz" - versions: type: file description: File containing software versions diff --git a/tests/modules/homer/makeucscfile/test.yml b/tests/modules/homer/makeucscfile/test.yml index cf3d1b4d..e6ccb9fa 100644 --- a/tests/modules/homer/makeucscfile/test.yml +++ b/tests/modules/homer/makeucscfile/test.yml @@ -4,4 +4,4 @@ - homer - homer/makeucscfile files: - - path: output/homer/tag_dir/tag_dir.ucsc.bedGraph.gz + - path: output/homer/test.bedGraph.gz