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Add --singularity_pull_docker_container to module yml
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14 changed files with 70 additions and 0 deletions
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@ -37,6 +37,11 @@ params:
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description: |
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description: |
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Run the module with Conda using the software specified
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Run the module with Conda using the software specified
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via the `conda` directive
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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## TODO nf-core: Add a description of all of the variables used as input
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## TODO nf-core: Add a description of all of the variables used as input
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input:
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input:
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- meta:
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- meta:
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@ -29,6 +29,11 @@ params:
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description: |
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description: |
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Run the module with Conda using the software specified
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Run the module with Conda using the software specified
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via the `conda` directive
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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input:
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input:
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- fasta:
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- fasta:
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type: file
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type: file
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@ -32,6 +32,11 @@ params:
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description: |
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description: |
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Run the module with Conda using the software specified
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Run the module with Conda using the software specified
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via the `conda` directive
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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input:
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input:
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- meta:
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- meta:
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type: map
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type: map
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@ -31,6 +31,11 @@ params:
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description: |
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description: |
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Run the module with Conda using the software specified
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Run the module with Conda using the software specified
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via the `conda` directive
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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input:
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input:
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- meta:
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- meta:
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type: map
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type: map
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@ -27,6 +27,11 @@ params:
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description: |
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description: |
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Run the module with Conda using the software specified
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Run the module with Conda using the software specified
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via the `conda` directive
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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input:
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input:
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- multiqc_files:
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- multiqc_files:
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type: file
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type: file
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@ -30,6 +30,11 @@ params:
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description: |
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description: |
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Run the module with Conda using the software specified
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Run the module with Conda using the software specified
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via the `conda` directive
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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input:
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input:
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- meta:
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- meta:
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type: map
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type: map
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@ -30,6 +30,11 @@ params:
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description: |
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description: |
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Run the module with Conda using the software specified
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Run the module with Conda using the software specified
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via the `conda` directive
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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input:
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input:
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- meta:
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- meta:
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type: map
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type: map
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@ -28,6 +28,11 @@ params:
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description: |
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description: |
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Run the module with Conda using the software specified
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Run the module with Conda using the software specified
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via the `conda` directive
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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input:
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input:
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- meta:
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- meta:
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type: map
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type: map
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@ -32,6 +32,11 @@ params:
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description: |
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description: |
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Run the module with Conda using the software specified
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Run the module with Conda using the software specified
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via the `conda` directive
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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input:
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input:
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- meta:
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- meta:
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type: map
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type: map
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@ -33,6 +33,11 @@ params:
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description: |
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description: |
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Run the module with Conda using the software specified
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Run the module with Conda using the software specified
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via the `conda` directive
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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input:
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input:
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- meta:
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- meta:
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type: map
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type: map
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@ -30,6 +30,11 @@ params:
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description: |
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description: |
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Run the module with Conda using the software specified
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Run the module with Conda using the software specified
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via the `conda` directive
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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input:
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input:
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- meta:
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- meta:
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type: map
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type: map
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@ -30,6 +30,11 @@ params:
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description: |
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description: |
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Run the module with Conda using the software specified
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Run the module with Conda using the software specified
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via the `conda` directive
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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input:
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input:
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- meta:
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- meta:
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type: map
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type: map
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@ -31,6 +31,11 @@ params:
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description: |
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description: |
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Run the module with Conda using the software specified
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Run the module with Conda using the software specified
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via the `conda` directive
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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input:
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input:
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- meta:
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- meta:
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type: map
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type: map
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@ -29,6 +29,11 @@ params:
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description: |
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description: |
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Run the module with Conda using the software specified
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Run the module with Conda using the software specified
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via the `conda` directive
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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- clip_r1:
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- clip_r1:
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type: integer
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type: integer
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description: |
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description: |
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