From 2395734492a43f341a0764a2b01769f3d3971af9 Mon Sep 17 00:00:00 2001
From: Kevin Menden <kevin.menden@t-online.de>
Date: Fri, 2 Jul 2021 14:15:32 +0200
Subject: [PATCH] Adapt linting action (#556)

* bump bcftools filter

* fix bcftools

* adapt module linting
---
 .github/workflows/nf-core-linting.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/nf-core-linting.yml b/.github/workflows/nf-core-linting.yml
index ddf47e5b..af4cade7 100644
--- a/.github/workflows/nf-core-linting.yml
+++ b/.github/workflows/nf-core-linting.yml
@@ -16,7 +16,7 @@ jobs:
       - uses: dorny/paths-filter@v2
         id: filter
         with:
-          filters: 'tests/config/pytest_software.yml'
+          filters: "tests/config/pytest_software.yml"
 
   lint:
     runs-on: ubuntu-20.04
@@ -29,7 +29,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        tags: ['${{ fromJson(needs.changes.outputs.modules) }}']
+        tags: ["${{ fromJson(needs.changes.outputs.modules) }}"]
     steps:
       - uses: actions/checkout@v2
 
@@ -65,7 +65,7 @@ jobs:
           sudo mv nextflow /usr/local/bin/
 
       - name: Lint ${{ matrix.tags }}
-        run: nf-core modules lint . -t ${{ matrix.tags }}
+        run: nf-core modules lint ${{ matrix.tags }}
 
       - uses: actions/cache@v2
         with: