diff --git a/tests/config/pytest_modules.yml b/tests/config/pytest_modules.yml
index effe6fe2..2c9ea7d4 100644
--- a/tests/config/pytest_modules.yml
+++ b/tests/config/pytest_modules.yml
@@ -1763,13 +1763,9 @@ snapaligner/index:
   - modules/snapaligner/index/**
   - tests/modules/snapaligner/index/**
 
-snapaligner/paired:
-  - modules/snapaligner/paired/**
-  - tests/modules/snapaligner/paired/**
-
-snapaligner/single:
-  - modules/snapaligner/single/**
-  - tests/modules/snapaligner/single/**
+snapaligner/align:
+  - modules/snapaligner/align/**
+  - tests/modules/snapaligner/align/**
 
 snpdists:
   - modules/snpdists/**