From 26fc6179833a63d44c0f74336e472eaa0f0ae7ac Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Wed, 15 Sep 2021 17:37:46 +0200 Subject: [PATCH] Update: MALT_RUN (#706) * Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * Bump MALT versions for MALT-run Co-authored-by: Harshil Patel --- modules/malt/run/main.nf | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/modules/malt/run/main.nf b/modules/malt/run/main.nf index 7b327d6e..8add081c 100644 --- a/modules/malt/run/main.nf +++ b/modules/malt/run/main.nf @@ -11,11 +11,11 @@ process MALT_RUN { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:[:], publish_by_meta:[]) } - conda (params.enable_conda ? "bioconda::malt=0.5.2" : null) + conda (params.enable_conda ? "bioconda::malt=0.53" : null) if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container "https://depot.galaxyproject.org/singularity/malt:0.5.2--0" + container "https://depot.galaxyproject.org/singularity/malt:0.53--hdfd78af_0" } else { - container "quay.io/biocontainers/malt:0.5.2--0" + container "quay.io/biocontainers/malt:0.53--hdfd78af_0" } input: