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Corrected containers and tested

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sruthipsuresh 2021-01-27 08:23:52 -06:00
parent 19b55fc67c
commit 295fff35ec
2 changed files with 4 additions and 4 deletions
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4
software/bedtools/complement/main.nf
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@ -13,9 +13,9 @@ process BEDTOOLS_COMPLEMENT {
conda (params.enable_conda ? "bioconda::bedtools=2.30.0" : null) conda (params.enable_conda ? "bioconda::bedtools=2.30.0" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/bedtools:bedtools:2.30.0--hc088bd4_0" container "https://depot.galaxyproject.org/singularity/bedtools:2.30.0--hc088bd4_0"
} else { } else {
container "quay.io/biocontainers/bedtools:bedtools:2.30.0--hc088bd4_0" container "quay.io/biocontainers/bedtools:2.30.0--hc088bd4_0"
} }
input: input:

4
software/bedtools/intersect/main.nf
View file

@ -13,9 +13,9 @@ process BEDTOOLS_INTERSECT {
conda (params.enable_conda ? "bioconda::bedtools=2.30.0" : null) conda (params.enable_conda ? "bioconda::bedtools=2.30.0" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/bedtools:bedtools:2.30.0--hc088bd4_0" container "https://depot.galaxyproject.org/singularity/bedtools:2.30.0--hc088bd4_0"
} else { } else {
container "quay.io/biocontainers/bedtools:bedtools:2.30.0--hc088bd4_0" container "quay.io/biocontainers/bedtools:2.30.0--hc088bd4_0"
} }
input: input: