mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2025-01-03 04:52:09 -05:00
Remove author entry from yml (copy-pasted :P)
This commit is contained in:
parent
ddbe8055c2
commit
29989035a5
2 changed files with 75 additions and 1 deletions
75
software/bcftools/bgzip/meta.yml
Normal file
75
software/bcftools/bgzip/meta.yml
Normal file
|
@ -0,0 +1,75 @@
|
||||||
|
name: bcftoos_
|
||||||
|
description: foo
|
||||||
|
keywords:
|
||||||
|
- align
|
||||||
|
- fasta
|
||||||
|
- genome
|
||||||
|
- reference
|
||||||
|
tools:
|
||||||
|
- bowtie2:
|
||||||
|
description: |
|
||||||
|
BCFtools is a set of utilities that manipulate variant calls in the
|
||||||
|
Variant Call Format (VCF) and its binary counterpart BCF.
|
||||||
|
homepage: http://samtools.github.io/bcftools/bcftools.html
|
||||||
|
documentation: http://www.htslib.org/doc/bcftools.html
|
||||||
|
doi: 10.1038/nmeth.1923
|
||||||
|
params:
|
||||||
|
- outdir:
|
||||||
|
type: string
|
||||||
|
description: |
|
||||||
|
The pipeline's output directory. By default, the module will
|
||||||
|
output files into `$params.outdir/<SOFTWARE>`
|
||||||
|
- publish_dir_mode:
|
||||||
|
type: string
|
||||||
|
description: |
|
||||||
|
Value for the Nextflow `publishDir` mode parameter.
|
||||||
|
Available: symlink, rellink, link, copy, copyNoFollow, move.
|
||||||
|
- enable_conda:
|
||||||
|
type: boolean
|
||||||
|
description: |
|
||||||
|
Run the module with Conda using the software specified
|
||||||
|
via the `conda` directive
|
||||||
|
- singularity_pull_docker_container:
|
||||||
|
type: boolean
|
||||||
|
description: |
|
||||||
|
Instead of directly downloading Singularity images for use with Singularity,
|
||||||
|
force the workflow to pull and convert Docker containers instead.
|
||||||
|
- save_unaligned:
|
||||||
|
type: boolean
|
||||||
|
description: Save unaligned reads
|
||||||
|
input:
|
||||||
|
- meta:
|
||||||
|
type: map
|
||||||
|
description: |
|
||||||
|
Groovy Map containing sample information
|
||||||
|
e.g. [ id:'test', single_end:false ]
|
||||||
|
- reads:
|
||||||
|
type: file
|
||||||
|
description: |
|
||||||
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
|
||||||
|
respectively.
|
||||||
|
- index:
|
||||||
|
type: file
|
||||||
|
description: Bowtie2 genome index files
|
||||||
|
pattern: "*.ebwt"
|
||||||
|
output:
|
||||||
|
- bam:
|
||||||
|
type: file
|
||||||
|
description: Output BAM file containing read alignments
|
||||||
|
pattern: "*.{bam}"
|
||||||
|
- version:
|
||||||
|
type: file
|
||||||
|
description: File containing software version
|
||||||
|
pattern: "*.{version.txt}"
|
||||||
|
- fastq:
|
||||||
|
type: file
|
||||||
|
description: Unaligned FastQ files
|
||||||
|
pattern: "*.fastq.gz"
|
||||||
|
- log:
|
||||||
|
type: file
|
||||||
|
description: Aligment log
|
||||||
|
pattern: "*.log"
|
||||||
|
authors:
|
||||||
|
- "@kevinmenden"
|
||||||
|
- "@joseespinosa"
|
||||||
|
- "@drpatelh"
|
|
@ -49,6 +49,5 @@ output:
|
||||||
description: File containing software version
|
description: File containing software version
|
||||||
pattern: "*.{version.txt}"
|
pattern: "*.{version.txt}"
|
||||||
authors:
|
authors:
|
||||||
- "@kevinmenden"
|
|
||||||
- "@joseespinosa"
|
- "@joseespinosa"
|
||||||
- "drpatelh"
|
- "drpatelh"
|
||||||
|
|
Loading…
Reference in a new issue