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Update main.nf

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Harshil Patel 2022-05-24 11:14:32 +01:00 committed by GitHub
parent 5db94ea0ee
commit 29a4f112be
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1 changed files with 5 additions and 6 deletions
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modules/cnvkit/reference/main.nf
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@ -8,20 +8,19 @@ process CNVKIT_REFERENCE {
'quay.io/biocontainers/cnvkit:0.9.9--pyhdfd78af_0' }" 'quay.io/biocontainers/cnvkit:0.9.9--pyhdfd78af_0' }"
input: input:
path fasta path fasta
path targets path targets
path antitargets path antitargets
output: output:
path("*.cnn") , emit: cnn path "*.cnn" , emit: cnn
path "versions.yml" , emit: versions path "versions.yml", emit: versions
when: when:
task.ext.when == null || task.ext.when task.ext.when == null || task.ext.when
script: script:
def args = task.ext.args ?: '' def args = task.ext.args ?: ''
""" """
cnvkit.py \\ cnvkit.py \\
reference \\ reference \\